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School of Engineering
- Undergraduate major in Mechanical Engineering
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- Common courses
- School of Materials and Chemical Technology
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- 工学院，物質理工学院，環境・社会理工学院共通科目
- Liberal arts and basic science courses
- First-Year Courses
- School of Science
- School of Engineering
- School of Materials and Chemical Technology
- School of Computing
- School of Life Science and Technology
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School of Environment and Society
- Department of Architecture and Building Engineering
- Department of Civil and Environmental Engineering
- Department of Transdisciplinary Science and Engineering
- Department of Social and Human Sciences
- Department of Innovation Science
- Graduate major in Technology and Innovation Management
- Common courses
- Liberal arts and basic science courses
- Academic unit or major
- Graduate major in Life Science and Technology
- Instructor(s)
- Tanji Yasunori Nakamura Satoshi Wachi Masaaki Hongoh Yuichi Yatsunami Rie
- Class Format
- Lecture
- Media-enhanced courses
- Day/Period(Room No.)
- Tue1-2(J233,S223) Fri1-2(J233,S223)
- Group
- -
- Course number
- LST.A503
- Credits
- 2
- Academic year
- 2018
- Offered quarter
- 2Q
- Syllabus updated
- 2018/3/20
- Lecture notes updated
- -
- Language used
- English
- Access Index
-
Course description and aims
Microorganisms living on earth are involved in the circulation of mass and energy on earth. Microorganisms express their own unique characteristics and functions depending on their environmental habitats, including natural environment, extreme environment, and internal environment of animals. Prof. Tanji provides analytical methods of microbial flora in environments and its practical application. Prof. Nakamura and Asoc. Prof. Yatsunami provide extremophiles, structures, and functions of enzymes produced by extremophiles. Prof. Wachi provides isolation and identification of soil microbes, and its application, including screening of antibiotics and bioremediation. Prof. Hongoh provides metagenomics and single-cell genomics of uncultured microbes.
Student learning outcomes
By the end of this course, students will be able to:
1. Understand the effect of material and energy circulation on the earth environment
2. Application of microbial functions on bioremediation, agriculture, and mass production
3. Understand the function and application of extremophiles
4. Understand how to analyze the structure and functions of environmental microbial communities
Keywords
Microbial flora, Wastewater treatment, Microbial corrosion, Pathogenic micoorganism, Extremophiles, Bioremediation, Uncultured microbes, Metagenomics
Competencies that will be developed
| ✔ Specialist skills | ✔ Intercultural skills | Communication skills | ✔ Critical thinking skills | ✔ Practical and/or problem-solving skills |
Class flow
In the first half of the class, a summary of the previous lecture is given. In the latter half, the main points of the day’s lecture are discussed in detail. Students are recommended to check the required learning for each class as part of preparation and review.
Course schedule/Required learning
| Course schedule | Required learning | |
|---|---|---|
| Class 1 | Isolation and identification of soil microbes (At the end of the class, the lecturer will summarize the contents briefly in Japanese) | Understand the methods of isolation and determination of soil microbes |
| Class 2 | Screening of antibiotics (1) (At the end of the class, the lecturer will summarize the contents briefly in Japanese) | Understand isolation and screening of antibiotics producing microbes |
| Class 3 | Screening of antibiotics (2) (At the end of the class, the lecturer will summarize the contents briefly in Japanese) | Understand isolation of antibiotics and its application |
| Class 4 | Application of microorganisms in industry (At the end of the class, the lecturer will summarize the contents briefly in Japanese) | Understand microbial fermentation |
| Class 5 | Culture-independent analysis of uncultured microbes | Explain how to analyze the community structure of uncultured microbiota |
| Class 6 | Metagenomics and single-cell genomics | Explain what are the metagenomics and single-cell genomics |
| Class 7 | Functional analysis of uncultured gut microbes | Explain the physiology and ecology of the gut microbiota |
| Class 8 | Circulation of material and energy in surface of the earth | Understanding of material and energy balance between reservoirs and effects on the environment |
| Class 9 | Dynamic models of ecosystem | Understanding of population dynamics in the ecosystem |
| Class 10 | Wastewater treatment process and microbiologically influenced corrosion | Understanding of mechanism and process of wastewater treatment, and microbiologically influenced corrosion |
| Class 11 | Pathogenic microbes and its control | Students must be able to recognize the variation pathogenic microbes and their control |
| Class 12 | Introduction; Thermophiles, alkaliphiles and their enzymes (At the end of the class, the lecturer will summarize the contents briefly in Japanese) | Explain the thermotolerant and alkalitolerant mechanisms of thermophiles, alkaliphiles and their enzymes |
| Class 13 | Organic solvent-tolerant microbes and their applications(At the end of the class, the lecturer will summarize the contents briefly in Japanese) | Explain the Organic solvent-tolerant mechanism of organic solvent-tolerant microbes and their applications |
| Class 14 | Piezophiles and their enzymes | Explain the piezotolerant mechanisms of piezophiles and their enzymes |
| Class 15 | Halophiles and their enzymes(At the end of the class, the lecturer will summarize the contents briefly in Japanese) | Explain the halotolerant mechanisms of halophiles and their enzymescontrol |
Textbook(s)
None required.
Reference books, course materials, etc.
Brock Biology of Microorganisms (14th edition)
Handouts will be distributed at the beginning of class when necessary and elaborated on using PowerPoint slides.
Assessment criteria and methods
Reports or exams by each instructor.
Related courses
- LST.A345 ： Microbiology
- LST.A336 ： Genetic Engineering
- LST.A208 ： Molecular Biology I
- LST.A213 ： Molecular Biology II
Prerequisites (i.e., required knowledge, skills, courses, etc.)
No prerequisites are necessary, but enrollment in the related courses is desirable.
Contact information (e-mail and phone) Notice : Please replace from "[at]" to "@"(half-width character).
Yasunori Tanji (ytanji[at]bio.titech.ac.jp, 5763), Stoshi Nakamura (snakamur[at]bio.titech.ac.jp, 5765), Masaaki Wachi (mwachi[at]bio.titech.ac.jp, 5770), Yuichi Hongoh (yhongo[at]bio.titech.ac.jp, 2865)
Office hours
Students may approach the instructors at the end of class or visit their offices upon securing an appointment through e-mail.
