2021 Molecular Biology II

Font size  SML

Register update notification mail Add to favorite lecture list
Academic unit or major
Undergraduate major in Life Science and Technology
Instructor(s)
Kimura Hiroshi  Koshikawa Naohiko  Aizawa Yasunori  Tachibana Kazunori  Suzuki Takashi 
Course component(s)
Lecture    (対面)
Day/Period(Room No.)
Tue7-8(H121)  Fri7-8(H121)  
Group
-
Course number
LST.A213
Credits
2
Academic year
2021
Offered quarter
3Q
Syllabus updated
2021/9/21
Lecture notes updated
-
Language used
Japanese
Access Index

Course description and aims

The course will cover the structure and dynamics of cellular components, and the basic technologies for studying cells, including cell isolation, cell culture, and light and electron microscopy. Topics will include the details of subcellular compartments and the mechanism of macromolecule traffic system, signal transduction, cell cycle, apoptosis, and carcinogenesis. As an excellent molecular biology model, the life cycle of some viruses and bacteriophages will also be picked up.

The course aims to understand the basics of cell structure and function, which is essential for further learning of higher-order biological function and application for bioengineering.

Molecular Biology II is designed to be taken with Molecular Biology I and Biochemistry I and II. Students are advised to enroll in all four courses in order to receive optimal instruction.

Student learning outcomes

By the end of this course, students will be able to:
1. explain the techniques for cell isolation, culture of useful cells such as stem cells, and cell manipulation for genetics and reverse-genetics, and the microscope technologies to observe cell structure and dynamics including light, fluorescence, and electron microscopes.
2. explain the mechanism of intracellular traffic, including cytoplasmic-nuclear transport, endoplasmic reticulum, trans-Golgi network, lysosome, endocytosis and exocytosis, and signal transduction, including ligand-receptor biding, second messenger, phosphorylation cascade.
3. explain the cell cycle and its regulation by Cdk-cyclin, checkpoint, chromosome segregation, and cytokinesis.
4. explain the mechanism of apoptosis and carcinogenesis, such as the nature of cancer cells, oncogene, anti-oncogenes, and treatments.
5. explain the characterization and structure of viruses, and the life cycle of lambda phase and influenza virus.

Keywords

cell culture, microscopy, membrane traffic, signal transduction, cell cycle, apoptosis, cancer, virus

Competencies that will be developed

Specialist skills Intercultural skills Communication skills Critical thinking skills Practical and/or problem-solving skills

Class flow

When necessary, in the first 10-15 min of each lecture, a summary of the previous lecture is given, followed by the main points of the day's lecture. In the last 10-15 min of each lecture, a quiz may be given to find out if students have learned the material given.

Course schedule/Required learning

  Course schedule Required learning
Class 1 Cell research strategy Students must be able to explain the techniques for cell isolation and the importance of culturing cells including stem cells.
Class 2 Microscopic observations Students must be able to explain the principle and application of cell observation techniques based on light and electron microscopy, such as phase-contrast, DIC, fluorescence, confocal, and TIRF.
Class 3 Cell compartment and traffic: other transport systems Students must be able to explain cellular compartmentalization and the general principle of protein traffic and nuclear import.
Class 4 Signal transduction: basics of intracellular signaling Students must be able to explain the basic molecular mechanism of intracellular signaling
Class 5 Signal transduction: GTP binding protein-coupled receptor and the second messengers Students must be able to explain GTP-binding protein-coupled receptor pathway and the second messenger through endoplasmic reticulum
Class 6 Signal transduction: enzyme-linked receptor and MAP kinase pathways Students must be able to explain GTP-binding protein-coupled receptor pathway and the second messenger
Class 7 Cell cycle: the basics and regulation Students must be able to explain the character of each phase of cell cycle
Class 8 Cell cycle: the basics and regulation Students must be able to explain the regulatory mechanism by Cdk-cyclin
Class 9 Cell cycle: mitosis and cytokinesis Students must be able to explain the molecular mechanism of mitosis, cytokinesis, and checkpoint
Class 10 Apoptosis Students must be able to explain the character, mechanism, and biological role of apoptosis
Class 11 Cancer: oncogenes and tumor suppressor genes Students must be able to explain how oncogenes and tumor suppressor genes contribute to tumorigenesis
Class 12 Cancer: detection and clinical treatment Students must be able to explain the characters of cancer cells, and the current situation of cancer treatment
Class 13 Viruses: life cycle of various viruses Students must be able to explain the types and typical structure of viruses, and the life cycle of lambda phage
Class 14 Viruses: life cycle of various viruses Students must be able to explain the life cycle of influenza and other viruses

Out-of-Class Study Time (Preparation and Review)

To enhance effective learning, students are encouraged to spend approximately 100 minutes preparing for class and another 100 minutes reviewing class content afterwards (including assignments) for each class.
They should do so by referring to textbooks and other course material.

Textbook(s)

Molecular Biology of the Cell, 5th & 6th Edition (Bruce Alberts et al., Garland Science); Biochemistry, 4th Edition (Donald Voet, Judith G. Voet, Wiley)

Reference books, course materials, etc.

Biochemistry, 4th Edition (Donald Voet, Judith G. Voet, Wiley)

Assessment criteria and methods

Students will be assessed on their ability to describe the molecular biology of the cell given in the course and to utilize the knowledge for problem-solving, and students' course scores are based on small examination and essays.

Related courses

  • LST.A208 : Molecular Biology I
  • LST.A203 : Biochemistry I
  • LST.A218 : Biochemistry II

Prerequisites (i.e., required knowledge, skills, courses, etc.)

No prerequisites are necessary, but enrollment in Biochemistry I and Molecular Biology I is desirable.

Page Top