2019 Bioinformatics(LST)

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Academic unit or major
Undergraduate major in Life Science and Technology
Instructor(s)
Itoh Takehiko  Sakurai Minoru  Yamada Takuji  Kitao Akio 
Course component(s)
Lecture
Day/Period(Room No.)
Tue3-4(H121)  Fri3-4(H121)  
Group
-
Course number
LST.A246
Credits
2
Academic year
2019
Offered quarter
4Q
Syllabus updated
2019/12/10
Lecture notes updated
-
Language used
Japanese
Access Index

Course description and aims

This course focuses on the basics of bioinformatics, which is an integrated field of life science and information technology.
Sakurai: 12/6, 12/13, 12/17, 12/20
Yamada: 11/29, 12/3, 12/10
Kitao: 12/24, 1/7, 1/10, 1/14, 1/21, 1/24, 1/28, 1/31

Student learning outcomes

Sakurai:
Yamada:
Kitao:

Keywords

Bioinformatics, database, sequence analysis, phylogenetic analysis
Calculus, thermodiyancs, Eigenvalue problem, variational method, analytical mechanics, statistical mechanics

Competencies that will be developed

Intercultural skills Communication skills Specialist skills Critical thinking skills Practical and/or problem-solving skills
- - -

Class flow

Lecture is given for each topic, followed by some practices when necessary.

Course schedule/Required learning

  Course schedule Required learning
Class 1 Yamada 1
Class 2 Yamada 2
Class 3 Sakurai 1
Class 4 Yamada 3
Class 5 Sakurai 2
Class 6 Sakurai 3
Class 7 Sakurai 4
Class 8 Microscopic states and probability (Kitao 1) Understand probability and microscopic states
Class 9 Kitao 2
Class 10 Kitao 3
Class 11 Kitao 4
Class 12 Kitao 5
Class 13 Kitao 6
Class 14 Kitao 7
Class 15 Kitao 8

Textbook(s)

None.

Reference books, course materials, etc.

Japanese Society of Bioinformatics. Bioinformatics Nyumon (Japanese), ISBN-13: 978-4766422511
David Mount. Bioinformatics: Sequence and Genome Analysis 2nd Edition, ISBN-13: 978-0879697129

Assessment criteria and methods

Assignment and Exam

Related courses

  • LST.A241 : Biostatistics
  • LST.A351 : Genome Informatics

Prerequisites (i.e., required knowledge, skills, courses, etc.)

None.

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