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- 工学院，物質理工学院，環境・社会理工学院共通科目
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School of Environment and Society
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- Common courses
- Liberal arts and basic science courses
- Academic unit or major
- Graduate major in Computer Science
- Instructor(s)
- Yokota Rio
- Class Format
- Lecture
- Media-enhanced courses
- Day/Period(Room No.)
- Mon1-2() Thr1-2()
- Group
- -
- Course number
- CSC.T526
- Credits
- 2
- Academic year
- 2021
- Offered quarter
- 1Q
- Syllabus updated
- 2021/3/19
- Lecture notes updated
- 2021/4/11
- Language used
- Japanese
- Access Index
-
Course description and aims
This course will equip students with the necessary knowledge and skills to develop fast algorithms and their massively parallel implementation on modern supercomputers using parallel programming techniques such as SIMD, OpenMP, MPI, and CUDA. The course will cover how to use various linear algebra libraries for parallel execution on both CPUs and GPUs. Tutorials on how to use debuggers and profilers in a massively parallel environment will also be given. Demonstration of performance primitives and how to build container environments on TSUBAME will be given, along with tips on how to execute deep learning frameworks on large GPU supercomputers.
Student learning outcomes
By the end of this course, students will be able to
1. Use SIMD vectorization, shared memory parallelization via OpenMP, and distributed memory parallelization via MPI
2. Program GPUs using OpenACC, CUDA, and HIP
3. Understand how high performance numerical libraries function, and will be able to use them appropriately
4. Debug and profile code in a parallel environment by using parallel debuggers and profilers
5. Use containers and deep learning frameworks on massively parallel computers
Keywords
Vectorization, Shared memory parallelism, Distributed memory parallelism, GPU programming, Python libraries, Matrix Multiplication, Linear solvers, Parallel debugger, Parallel profilers, Containers, Deep Learning
Competencies that will be developed
| ✔ Specialist skills | Intercultural skills | Communication skills | ✔ Critical thinking skills | ✔ Practical and/or problem-solving skills |
Class flow
Courses will be taught online.
Sample codes will be prepared for each lecture, and exercises will be performed on TSUBAME.
Course schedule/Required learning
| Course schedule | Required learning | |
|---|---|---|
| Class 1 | Introduction to parallel programming | Introduction to the basic concepts of parallel programming |
| Class 2 | Shared memory parallelization | Use OpenMP to achieve shared memory parallelization |
| Class 3 | Distributed memory parallelization | Use MPI to achieve distributed memory parallelization |
| Class 4 | SIMD parallelization | Use SSE, AVX, and AVX512 to achieve SIMD vectorization |
| Class 5 | GPU programming 1 | Use OpenACC and OpenMP to program GPUs |
| Class 6 | GPU programming 2 | Use CUDA and HIP to program GPUs |
| Class 7 | Parallel programming models | Use advanced parallel programming models such as StarPU, OmpSs, and Legion |
| Class 8 | Cache blocking | Use BLISLAB and CUBLAS as an example to practice cache blocking |
| Class 9 | High performance Python | Understand how numPy, cuPy, and other libraries can be used to accelerate Python code |
| Class 10 | I/O libraries | Use NetCDF, HDF5, MPI-IO to read and write on large parallel file systems |
| Class 11 | Parallel debugger | Use CUDA-GDB, Valgrind, TotalView to debug parallel code |
| Class 12 | Parallel profiler | Use gprof, VTune, PAPI, Tau, Vampire to profile parallel code |
| Class 13 | Containers | Use Singularity with Docker images to build container environments |
| Class 14 | Scientific Computing | Learn how to discretize partial differential equations and parallelize the resulting system of equations |
| Class 15 | Deep Learning | Use PyTorch to train a large neural network on a parallel computer |
Out-of-Class Study Time (Preparation and Review)
To enhance effective learning, students are encouraged to spend approximately 100 minutes preparing for class and another 100 minutes reviewing class content afterwards (including assignments) for each class.
They should do so by referring to textbooks and other course material.
Textbook(s)
None
Reference books, course materials, etc.
None
Assessment criteria and methods
Evaluation is based on written reports (40%) and final report (60%).
Related courses
- Numerical Analysis
- Basic Application of Computing and Mathematical Sciences
Prerequisites (i.e., required knowledge, skills, courses, etc.)
None
Other
The Zoom link will be send to registered students one day before the first lecture.
